IL_7N1P_082

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7N1P|1|23|G|801, 7N1P|1|23|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_082 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0572

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7N1P|1|23|G|674
7N1P|1|23|A|675
7N1P|1|23|A|676
7N1P|1|23|A|677
7N1P|1|23|C|678
*
7N1P|1|23|G|799
7N1P|1|23|A|800
7N1P|1|23|G|801
7N1P|1|23|A|802
7N1P|1|23|U|803
7N1P|1|23|A|804
7N1P|1|23|G|805
7N1P|1|23|C|806

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15