IL_7N1P_107

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7N1P|1|23|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_107 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2049

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7N1P|1|23|G|1087
7N1P|1|23|A|1088
7N1P|1|23|A|1089
7N1P|1|23|A|1090
7N1P|1|23|G|1091
*
7N1P|1|23|C|1100
7N1P|1|23|U|1101
7N1P|1|23|C|1102

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LK

50S ribosomal protein L11

Chain Lj

50S ribosomal protein L36