3D structure

PDB id
7N1P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
7N1P|1|23|A|1938, 7N1P|1|23|U|1944, 7N1P|1|23|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7N1P_141 not in the Motif Atlas
Geometric match to IL_4WF9_077
Geometric discrepancy: 0.0871
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

7N1P|1|23|C|1934
7N1P|1|23|G|1935
7N1P|1|23|A|1936
7N1P|1|23|A|1937
7N1P|1|23|A|1938
7N1P|1|23|5MU|1939
7N1P|1|23|U|1940
7N1P|1|23|C|1941
7N1P|1|23|C|1942
7N1P|1|23|U|1943
7N1P|1|23|U|1944
7N1P|1|23|G|1945
*
7N1P|1|23|C|1961
7N1P|1|23|5MC|1962
7N1P|1|23|U|1963
7N1P|1|23|G|1964

Current chains

Chain 23
23S rRNA

Nearby chains

Chain 16
Small subunit ribosomal RNA; SSU rRNA
Chain LB
50S ribosomal protein L2
Chain Pt
Transfer RNA; tRNA

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