IL_7N1P_169

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N1P_169 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7N1P|1|23|C|2652
7N1P|1|23|U|2653
7N1P|1|23|A|2654
7N1P|1|23|G|2655
7N1P|1|23|U|2656
7N1P|1|23|A|2657
7N1P|1|23|C|2658
*
7N1P|1|23|G|2663
7N1P|1|23|G|2664
7N1P|1|23|A|2665
7N1P|1|23|C|2666
7N1P|1|23|C|2667
7N1P|1|23|G|2668

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LF

50S ribosomal protein L6