IL_7N2C_038

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7N2C|1|16|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_038 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.0997

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7N2C|1|16|G|922
7N2C|1|16|A|923
*
7N2C|1|16|U|1393
7N2C|1|16|A|1394
7N2C|1|16|C|1395

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SE

30S ribosomal protein S5