IL_7N2C_105

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7N2C|1|23|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_105 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.116

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

7N2C|1|23|C|1196
7N2C|1|23|G|1197
7N2C|1|23|U|1198
*
7N2C|1|23|A|1247
7N2C|1|23|G|1248
7N2C|1|23|U|1249
7N2C|1|23|G|1250

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15

Chain LT

50S ribosomal protein L20