IL_7N2C_127

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7N2C|1|23|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_127 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7N2C|1|23|C|1686
7N2C|1|23|G|1687
7N2C|1|23|U|1688
7N2C|1|23|A|1689
7N2C|1|23|A|1690
7N2C|1|23|C|1691
*
7N2C|1|23|G|1696
7N2C|1|23|G|1697
7N2C|1|23|A|1698
7N2C|1|23|G|1699
7N2C|1|23|A|1700
7N2C|1|23|A|1701
7N2C|1|23|G|1702

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2