IL_7N2C_135

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_135 not in the Motif Atlas

Homologous match to IL_4WF9_072

Geometric discrepancy: 0.3901

The information below is about IL_4WF9_072

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

7N2C|1|23|G|1846
7N2C|1|23|A|1847
7N2C|1|23|A|1848
7N2C|1|23|G|1849
*
7N2C|1|23|C|1893
7N2C|1|23|C|1894

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain Dt

Transfer RNA; tRNA

Chain LB

50S ribosomal protein L2