IL_7N2C_157

3D structure

PDB id

7N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2C_157 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.2757

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

7N2C|1|23|A|2459
7N2C|1|23|U|2460
7N2C|1|23|A|2461
*
7N2C|1|23|U|2489
7N2C|1|23|G|2490
7N2C|1|23|U|2491
7N2C|1|23|U|2492
7N2C|1|23|U|2493

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LP

50S ribosomal protein L16

Chain La

50S ribosomal protein L27