IL_7N2U_014

3D structure

PDB id

7N2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7N2U|1|16|U|244, 7N2U|1|16|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2U_014 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0994

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7N2U|1|16|G|242
7N2U|1|16|A|243
7N2U|1|16|U|244
7N2U|1|16|U|245
7N2U|1|16|A|246
7N2U|1|16|G|247
*
7N2U|1|16|C|277
7N2U|1|16|G|278
7N2U|1|16|A|279
7N2U|1|16|C|280
7N2U|1|16|G|281
7N2U|1|16|A|282
7N2U|1|16|U|283
7N2U|1|16|C|284

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SQ

30S ribosomal protein S17