IL_7N2U_023

3D structure

PDB id

7N2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2U_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.0973

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7N2U|1|16|G|450
7N2U|1|16|A|451
7N2U|1|16|A|452
7N2U|1|16|G|453
7N2U|1|16|G|454
7N2U|1|16|G|455
*
7N2U|1|16|C|477
7N2U|1|16|A|478
7N2U|1|16|U|479
7N2U|1|16|U|480
7N2U|1|16|G|481
7N2U|1|16|A|482
7N2U|1|16|C|483

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SP

30S ribosomal protein S16