IL_7N2U_038

3D structure

PDB id

7N2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2U_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0642

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7N2U|1|16|G|887
7N2U|1|16|G|888
7N2U|1|16|A|889
7N2U|1|16|G|890
7N2U|1|16|U|891
7N2U|1|16|A|892
7N2U|1|16|C|893
7N2U|1|16|G|894
*
7N2U|1|16|U|905
7N2U|1|16|A|906
7N2U|1|16|A|907
7N2U|1|16|A|908
7N2U|1|16|A|909
7N2U|1|16|C|910

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12