IL_7N2V_080

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7N2V|1|23|G|801, 7N2V|1|23|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_080 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0687

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7N2V|1|23|G|674
7N2V|1|23|A|675
7N2V|1|23|A|676
7N2V|1|23|A|677
7N2V|1|23|C|678
*
7N2V|1|23|G|799
7N2V|1|23|A|800
7N2V|1|23|G|801
7N2V|1|23|A|802
7N2V|1|23|U|803
7N2V|1|23|A|804
7N2V|1|23|G|805
7N2V|1|23|C|806

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15