IL_7N2V_105

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7N2V|1|23|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_105 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3966

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7N2V|1|23|G|1087
7N2V|1|23|A|1088
7N2V|1|23|A|1089
7N2V|1|23|A|1090
7N2V|1|23|G|1091
*
7N2V|1|23|C|1100
7N2V|1|23|U|1101
7N2V|1|23|C|1102

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LK

50S ribosomal protein L11

Chain Lj

50S ribosomal protein L36