IL_7N2V_143

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GU(7MG)A*UCC

Length

7 nucleotides

Bulged bases

7N2V|1|23|U|2068

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_143 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1485

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7N2V|1|23|G|2067
7N2V|1|23|U|2068
7N2V|1|23|7MG|2069
7N2V|1|23|A|2070
*
7N2V|1|23|U|2441
7N2V|1|23|C|2442
7N2V|1|23|C|2443

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15

Chain Pp

Nascent peptide