IL_7N2V_161

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7N2V|1|23|G|2576, 7N2V|1|23|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N2V_161 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0717

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7N2V|1|23|C|2510
7N2V|1|23|U|2511
7N2V|1|23|C|2512
*
7N2V|1|23|G|2574
7N2V|1|23|C|2575
7N2V|1|23|G|2576
7N2V|1|23|A|2577
7N2V|1|23|G|2578

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain Lf

50S ribosomal protein L32

Chain Pp

Nascent peptide