IL_7N30_041

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7N30|1|16|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N30_041 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0947

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7N30|1|16|G|933
7N30|1|16|C|934
7N30|1|16|A|935
*
7N30|1|16|U|1380
7N30|1|16|U|1381
7N30|1|16|C|1382
7N30|1|16|C|1383
7N30|1|16|C|1384

Current chains

Chain 16

16S rRNA

Nearby chains

Chain Dt

Transfer RNA; tRNA

Chain SG

30S ribosomal protein S7

Chain SI

30S ribosomal protein S9