IL_7N30_072

3D structure

PDB id

7N30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N30_072 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0495

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7N30|1|23|C|239
7N30|1|23|C|240
7N30|1|23|A|241
7N30|1|23|G|242
7N30|1|23|U|243
7N30|1|23|A|244
7N30|1|23|G|245
*
7N30|1|23|C|253
7N30|1|23|G|254
7N30|1|23|A|255
7N30|1|23|A|256
7N30|1|23|C|257
7N30|1|23|G|258

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LO

50S ribosomal protein L15

Chain Li

50S ribosomal protein L35