IL_7N3O_002

3D structure

PDB id

7N3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Cas12k-sgRNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAU*AAUAA

Length

9 nucleotides

Bulged bases

7N3O|1|B|A|157

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N3O_002 not in the Motif Atlas

Geometric match to IL_5J7L_327

Geometric discrepancy: 0.3425

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

7N3O|1|B|U|114
7N3O|1|B|G|115
7N3O|1|B|A|116
7N3O|1|B|U|117
*
7N3O|1|B|A|154
7N3O|1|B|A|155
7N3O|1|B|U|156
7N3O|1|B|A|157
7N3O|1|B|A|158

Current chains

Chain B

Single guide RNA

Nearby chains

Chain A

Cas12k