IL_7N8B_002

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

7N8B|1|A4|C|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_002 not in the Motif Atlas

Homologous match to IL_8C3A_002

Geometric discrepancy: 0.0852

The information below is about IL_8C3A_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

7N8B|1|A1|C|7
7N8B|1|A1|C|8
*
7N8B|1|A4|G|150
7N8B|1|A4|C|151
7N8B|1|A4|G|152

Current chains

Chain A1

25S

Chain A4

5.8S

Nearby chains

Chain AG

60S ribosomal protein L8-A

Chain AN

60S ribosomal protein L15-A

Chain AX

60S ribosomal protein L25