IL_7N8B_033

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_033 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0708

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7N8B|1|A1|U|834
7N8B|1|A1|G|835
7N8B|1|A1|A|836
7N8B|1|A1|A|837
7N8B|1|A1|G|838
*
7N8B|1|A1|U|855
7N8B|1|A1|G|856
7N8B|1|A1|G|857
7N8B|1|A1|A|858
7N8B|1|A1|G|859

Current chains

Chain A1

25S

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain AR

60S ribosomal protein L19-A

Chain Ap

60S ribosomal protein L43-A