IL_7N8B_041

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_041 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.1308

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

7N8B|1|A1|A|997
7N8B|1|A1|A|998
*
7N8B|1|A1|U|1050
7N8B|1|A1|U|1051
7N8B|1|A1|U|1052

Current chains

Chain A1

25S

Nearby chains

Chain A3

5S ribosomal RNA; 5S rRNA

Chain AD

60S ribosomal protein L5

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21-A