IL_7N8B_088

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_088 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0989

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7N8B|1|A1|U|2211
7N8B|1|A1|C|2212
7N8B|1|A1|A|2213
7N8B|1|A1|A|2214
7N8B|1|A1|A|2215
7N8B|1|A1|G|2216
7N8B|1|A1|U|2217
*
7N8B|1|A1|A|2228
7N8B|1|A1|A|2229
7N8B|1|A1|C|2230
7N8B|1|A1|C|2231
7N8B|1|A1|A|2232
7N8B|1|A1|A|2233
7N8B|1|A1|G|2234

Current chains

Chain A1

25S

Nearby chains

Chain Ai

60S ribosomal protein L36-A