IL_7N8B_136

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

7N8B|1|A1|G|3369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_136 not in the Motif Atlas

Homologous match to IL_8C3A_139

Geometric discrepancy: 0.0846

The information below is about IL_8C3A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83162.8

Basepair signature

cWW-cWW-tSH-cWW-tHH-L

Number of instances in this motif group

4

Unit IDs

7N8B|1|A1|U|3332
7N8B|1|A1|G|3333
7N8B|1|A1|U|3334
7N8B|1|A1|A|3335
7N8B|1|A1|A|3336
7N8B|1|A1|G|3337
*
7N8B|1|A1|C|3367
7N8B|1|A1|U|3368
7N8B|1|A1|G|3369
7N8B|1|A1|A|3370
7N8B|1|A1|G|3371

Current chains

Chain A1

25S

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

60S ribosomal protein L24-A

Chain Ad

60S ribosomal protein L31-A