IL_7N8B_138

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_138 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1122

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7N8B|1|A1|A|3342
7N8B|1|A1|G|3343
7N8B|1|A1|A|3344
7N8B|1|A1|G|3345
*
7N8B|1|A1|C|3360
7N8B|1|A1|G|3361
7N8B|1|A1|A|3362
7N8B|1|A1|U|3363

Current chains

Chain A1

25S

Nearby chains

Chain AR

60S ribosomal protein L19-A

Chain AW

60S ribosomal protein L24-A

Chain BI

40S ribosomal protein S8-A