IL_7N8B_139

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7N8B|1|A1|U|3354, 7N8B|1|A1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_139 not in the Motif Atlas

Geometric match to IL_5TBW_136

Geometric discrepancy: 0.2607

The information below is about IL_5TBW_136

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

7N8B|1|A1|C|3349
7N8B|1|A1|C|3350
*
7N8B|1|A1|G|3353
7N8B|1|A1|U|3354
7N8B|1|A1|U|3355
7N8B|1|A1|G|3356

Current chains

Chain A1

25S

Nearby chains

Chain BI

40S ribosomal protein S8-A