IL_7N8B_187

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_187 not in the Motif Atlas

Geometric match to IL_4V88_423

Geometric discrepancy: 0.2009

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

7N8B|1|B5|A|746
7N8B|1|B5|C|747
*
7N8B|1|B5|G|802
7N8B|1|B5|A|803
7N8B|1|B5|A|804
7N8B|1|B5|U|805

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BH

40S ribosomal protein S7-A

Chain BL

40S ribosomal protein S11-A

Chain BW

40S ribosomal protein S22-A

Chain BX

40S ribosomal protein S23-A