IL_7N8B_198

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUCAG*CUUGGAUU

Length

13 nucleotides

Bulged bases

7N8B|1|B5|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_198 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1174

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7N8B|1|B5|G|895
7N8B|1|B5|U|896
7N8B|1|B5|C|897
7N8B|1|B5|A|898
7N8B|1|B5|G|899
*
7N8B|1|B5|C|910
7N8B|1|B5|U|911
7N8B|1|B5|U|912
7N8B|1|B5|G|913
7N8B|1|B5|G|914
7N8B|1|B5|A|915
7N8B|1|B5|U|916
7N8B|1|B5|U|917

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S1-A

Chain BO

40S ribosomal protein S14-A