IL_7N8B_204

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_204 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.0911

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7N8B|1|B5|G|1111
7N8B|1|B5|G|1112
7N8B|1|B5|A|1113
7N8B|1|B5|G|1114
7N8B|1|B5|U|1115
7N8B|1|B5|A|1116
7N8B|1|B5|U|1117
7N8B|1|B5|G|1118
*
7N8B|1|B5|U|1129
7N8B|1|B5|G|1130
7N8B|1|B5|A|1131
7N8B|1|B5|A|1132
7N8B|1|B5|A|1133
7N8B|1|B5|C|1134

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A

Chain BX

40S ribosomal protein S23-A