IL_7N8B_213
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- G(OMG)UGCAU*AUGCC
- Length
- 12 nucleotides
- Bulged bases
- 7N8B|1|B5|C|1274
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N8B_213 not in the Motif Atlas
- Geometric match to IL_8VM9_004
- Geometric discrepancy: 0.3969
- The information below is about IL_8VM9_004
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7N8B|1|B5|G|1270
7N8B|1|B5|OMG|1271
7N8B|1|B5|U|1272
7N8B|1|B5|G|1273
7N8B|1|B5|C|1274
7N8B|1|B5|A|1275
7N8B|1|B5|U|1276
*
7N8B|1|B5|A|1436
7N8B|1|B5|U|1437
7N8B|1|B5|G|1438
7N8B|1|B5|C|1439
7N8B|1|B5|C|1440
Current chains
- Chain B5
- 18S RIBOSOMAL RNA
Nearby chains
- Chain BD
- 40S ribosomal protein S3
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bh
- Suppressor protein STM1
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