IL_7N8B_227

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7N8B|1|B5|C|1637, 7N8B|1|B5|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_227 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1032

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7N8B|1|B5|C|1636
7N8B|1|B5|C|1637
7N8B|1|B5|G|1638
*
7N8B|1|B5|C|1764
7N8B|1|B5|A|1765
7N8B|1|B5|A|1766
7N8B|1|B5|G|1767

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain Ba

40S ribosomal protein S26-B

Chain Bh

Suppressor protein STM1