IL_7N8B_232

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_232 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.104

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7N8B|1|B5|C|1653
7N8B|1|B5|G|1654
7N8B|1|B5|A|1655
7N8B|1|B5|U|1656
*
7N8B|1|B5|A|1744
7N8B|1|B5|G|1745
7N8B|1|B5|A|1746
7N8B|1|B5|G|1747

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain An

60S ribosomal protein L41-A