IL_7N8B_236

3D structure

PDB id

7N8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7N8B_236 not in the Motif Atlas

Geometric match to IL_4V88_472

Geometric discrepancy: 0.1272

The information below is about IL_4V88_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7N8B|1|B5|G|1672
7N8B|1|B5|G|1673
7N8B|1|B5|C|1674
*
7N8B|1|B5|G|1727
7N8B|1|B5|A|1728
7N8B|1|B5|C|1729

Current chains

Chain B5

18S RIBOSOMAL RNA

Nearby chains

Chain BG

40S ribosomal protein S6-A

Chain BI

40S ribosomal protein S8-A