IL_7N8B_248
3D structure
- PDB id
- 7N8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cycloheximide bound vacant 80S structure isolated from cbf5-D95A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.05 Å
Loop
- Sequence
- C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 7N8B|1|A1|A2M|2281, 7N8B|1|A1|C|2287, 7N8B|1|A1|C|2306
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7N8B_248 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.0911
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
7N8B|1|A1|C|2277
7N8B|1|A1|5MC|2278
7N8B|1|A1|A|2279
7N8B|1|A1|A2M|2280
7N8B|1|A1|A2M|2281
7N8B|1|A1|U|2282
7N8B|1|A1|G|2283
7N8B|1|A1|C|2284
7N8B|1|A1|C|2285
7N8B|1|A1|U|2286
7N8B|1|A1|C|2287
7N8B|1|A1|OMG|2288
*
7N8B|1|A1|C|2304
7N8B|1|A1|G|2305
7N8B|1|A1|C|2306
7N8B|1|A1|G|2307
Current chains
- Chain A1
- 25S
Nearby chains
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: