IL_7NAC_046

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

7NAC|1|1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAC_046 not in the Motif Atlas

Geometric match to IL_4V9F_002

Geometric discrepancy: 0.1851

The information below is about IL_4V9F_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7NAC|1|1|U|1398
7NAC|1|1|A|1399
7NAC|1|1|G|1400
*
7NAC|1|1|C|1411
7NAC|1|1|G|1412

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain E

60S ribosomal protein L6-A

Chain e

60S ribosomal protein L32