IL_7NAC_052

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

7NAC|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAC_052 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.3281

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7NAC|1|1|G|1623
7NAC|1|1|G|1624
*
7NAC|1|1|U|1820
7NAC|1|1|U|1821
7NAC|1|1|C|1822

Current chains

Chain 1

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain m

Ribosome biogenesis protein ERB1

Chain n

Pescadillo homolog