IL_7NAC_080

3D structure

PDB id

7NAC (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUCU*AACGUG(A2M)G

Length

12 nucleotides

Bulged bases

7NAC|1|1|U|2880, 7NAC|1|1|C|2881, 7NAC|1|1|G|2945

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NAC|1|1|C|2879
7NAC|1|1|U|2880
7NAC|1|1|C|2881
7NAC|1|1|U|2882
*
7NAC|1|1|A|2940
7NAC|1|1|A|2941
7NAC|1|1|C|2942
7NAC|1|1|G|2943
7NAC|1|1|U|2944
7NAC|1|1|G|2945
7NAC|1|1|A2M|2946
7NAC|1|1|G|2947

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase