IL_7NAS_012

3D structure

PDB id

7NAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state A (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7NAS|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAS_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7NAS|1|A|G|147
7NAS|1|A|G|148
7NAS|1|A|A|149
7NAS|1|A|U|150
7NAS|1|A|A|151
7NAS|1|A|A|152
7NAS|1|A|C|153
*
7NAS|1|A|G|168
7NAS|1|A|C|169
7NAS|1|A|U|170
7NAS|1|A|A|171
7NAS|1|A|A|172
7NAS|1|A|U|173
7NAS|1|A|A|174
7NAS|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20