3D structure

PDB id
7NAU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state C (Consensus Refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.78 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
7NAU|1|A|U|244, 7NAU|1|A|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NAU_014 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.154
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

7NAU|1|A|G|242
7NAU|1|A|A|243
7NAU|1|A|U|244
7NAU|1|A|U|245
7NAU|1|A|A|246
7NAU|1|A|G|247
*
7NAU|1|A|C|277
7NAU|1|A|G|278
7NAU|1|A|A|279
7NAU|1|A|C|280
7NAU|1|A|G|281
7NAU|1|A|A|282
7NAU|1|A|U|283
7NAU|1|A|C|284

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


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