IL_7NAV_026

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7NAV|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAV_026 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1243

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7NAV|1|A|C|569
7NAV|1|A|G|570
7NAV|1|A|U|571
7NAV|1|A|A|572
7NAV|1|A|A|573
7NAV|1|A|A|574
7NAV|1|A|G|575
*
7NAV|1|A|C|880
7NAV|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17