IL_7NAV_034

3D structure

PDB id

7NAV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGAAUU*AGGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NAV_034 not in the Motif Atlas

Homologous match to IL_4LFB_030

Geometric discrepancy: 0.1426

The information below is about IL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04668.2

Basepair signature

cWW-cWW-cWW-L-R-L-R-cWW

Number of instances in this motif group

8

Unit IDs

7NAV|1|A|A|673
7NAV|1|A|G|674
7NAV|1|A|A|675
7NAV|1|A|A|676
7NAV|1|A|U|677
7NAV|1|A|U|678
*
7NAV|1|A|A|712
7NAV|1|A|G|713
7NAV|1|A|G|714
7NAV|1|A|A|715
7NAV|1|A|A|716
7NAV|1|A|U|717

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain K

30S ribosomal protein S11

Chain R

30S ribosomal protein S18