IL_7NBU_012

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7NBU|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1169

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7NBU|1|A|G|147
7NBU|1|A|G|148
7NBU|1|A|A|149
7NBU|1|A|U|150
7NBU|1|A|A|151
7NBU|1|A|A|152
7NBU|1|A|C|153
*
7NBU|1|A|G|168
7NBU|1|A|C|169
7NBU|1|A|U|170
7NBU|1|A|A|171
7NBU|1|A|A|172
7NBU|1|A|U|173
7NBU|1|A|A|174
7NBU|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20