3D structure

PDB id
7NBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
7NBU|1|A|U|244, 7NBU|1|A|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NBU_014 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.0997
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

7NBU|1|A|G|242
7NBU|1|A|A|243
7NBU|1|A|U|244
7NBU|1|A|U|245
7NBU|1|A|A|246
7NBU|1|A|G|247
*
7NBU|1|A|C|277
7NBU|1|A|G|278
7NBU|1|A|A|279
7NBU|1|A|C|280
7NBU|1|A|G|281
7NBU|1|A|A|282
7NBU|1|A|U|283
7NBU|1|A|C|284

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain Q
30S ribosomal protein S17

Coloring options:


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