IL_7NBU_062

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_062 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1446

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NBU|1|A|G|1401
7NBU|1|A|4OC|1402
7NBU|1|A|C|1403
7NBU|1|A|C|1404
*
7NBU|1|A|G|1497
7NBU|1|A|UR3|1498
7NBU|1|A|A|1499
7NBU|1|A|A|1500
7NBU|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain V

Transfer RNA; tRNA

Chain X

cspA mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA