IL_7NBU_075

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_075 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0919

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7NBU|1|a|C|239
7NBU|1|a|C|240
7NBU|1|a|A|241
7NBU|1|a|G|242
7NBU|1|a|U|243
7NBU|1|a|A|244
7NBU|1|a|G|245
*
7NBU|1|a|C|253
7NBU|1|a|G|254
7NBU|1|a|A|255
7NBU|1|a|A|256
7NBU|1|a|C|257
7NBU|1|a|G|258

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain k

50S ribosomal protein L15