IL_7NBU_090

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

AACU*AU

Length

6 nucleotides

Bulged bases

7NBU|1|a|C|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_090 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.1303

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7NBU|1|a|A|844
7NBU|1|a|A|845
7NBU|1|a|C|846
7NBU|1|a|U|847
*
7NBU|1|a|A|933
7NBU|1|a|U|934

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

50S ribosomal protein L30