IL_7NBU_109

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7NBU|1|a|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_109 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0693

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7NBU|1|a|C|1208
7NBU|1|a|U|1209
7NBU|1|a|G|1210
7NBU|1|a|U|1211
7NBU|1|a|G|1212
7NBU|1|a|A|1213
7NBU|1|a|A|1214
7NBU|1|a|G|1215
*
7NBU|1|a|U|1234
7NBU|1|a|G|1235
7NBU|1|a|G|1236
7NBU|1|a|A|1237
7NBU|1|a|G|1238

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20