IL_7NBU_116

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

7NBU|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_116 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.1375

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7NBU|1|a|C|1417
7NBU|1|a|G|1418
7NBU|1|a|A|1419
7NBU|1|a|A|1420
7NBU|1|a|G|1421
*
7NBU|1|a|C|1577
7NBU|1|a|U|1578
7NBU|1|a|A|1579
7NBU|1|a|A|1580
7NBU|1|a|G|1581

Current chains

Chain a

23S ribosomal RNA

Nearby chains