IL_7NBU_131

3D structure

PDB id

7NBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NBU_131 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1379

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7NBU|1|a|U|1720
7NBU|1|a|G|1721
7NBU|1|a|A|1722
7NBU|1|a|A|1723
7NBU|1|a|G|1724
*
7NBU|1|a|U|1736
7NBU|1|a|G|1737
7NBU|1|a|G|1738
7NBU|1|a|A|1739
7NBU|1|a|G|1740

Current chains

Chain a

23S ribosomal RNA

Nearby chains