IL_7NBU_178
3D structure
- PDB id
- 7NBU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- 7NBU|1|A|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NBU_178 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.2685
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
7NBU|1|A|5MC|1407
7NBU|1|A|A|1408
7NBU|1|A|C|1409
*
7NBU|1|A|G|1491
7NBU|1|A|A|1492
7NBU|1|A|A|1493
7NBU|1|A|G|1494
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain X
- cspA mRNA
- Chain Y
- Probable endoribonuclease HigB1
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: